vcf2maf

Up for Adoption

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

GitHub Repository

https://github.com/mskcc/vcf2maf

Field

bioinformatics

Language

perl

Clone and Build

    git clone https://github.com/Illumina/DRAGMAP.git
    cd DRAGMAP
    make

Backstory

Thanks for this, everyone. I have merged recent PRs and made fixes related to changes in VEP args and output. See https://github.com/mskcc/vcf2maf/releases/tag/v1.6.22

There is no team at MSKCC working on vcf2maf anymore, after I quit in 2020. But I still have edit rights to the repo. Let me go through all the forks and see which one is a worthwhile replacement. Then I’ll update the readme to redirect folks there. https://github.com/mskcc/vcf2maf/issues/340#issuecomment-2143014911